HL_8CSU_017

3D structure

PDB id

8CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial small subunit assembly intermediate (State C*)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

AUGAAACUU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CSU_017 not in the Motif Atlas

Geometric match to HL_4FRN_005

Geometric discrepancy: 0.1396

The information below is about HL_4FRN_005

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

8CSU|1|A|A|1399
8CSU|1|A|U|1400
8CSU|1|A|G|1401
8CSU|1|A|A|1402
8CSU|1|A|A|1403
8CSU|1|A|A|1404
8CSU|1|A|C|1405
8CSU|1|A|U|1406
8CSU|1|A|U|1407

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain K

28S ribosomal protein S14, mitochondrial

Chain Z

28S ribosomal protein S33, mitochondrial