3D structure

PDB id
8CVK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
GCUUUGC
Length
7 nucleotides
Bulged bases
8CVK|1|1a|U|202, 8CVK|1|1a|U|204
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CVK_075 not in the Motif Atlas
Homologous match to HL_6CZR_076
Geometric discrepancy: 0.3647
The information below is about HL_6CZR_076
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_34168.3
Basepair signature
cWW-cWW-F
Number of instances in this motif group
11

Unit IDs

8CVK|1|1a|G|200
8CVK|1|1a|C|201
8CVK|1|1a|U|202
8CVK|1|1a|U|203
8CVK|1|1a|U|204
8CVK|1|1a|G|216
8CVK|1|1a|C|217

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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