3D structure

PDB id
8CVK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
GUGAAAGCC
Length
9 nucleotides
Bulged bases
8CVK|1|2A|G|329
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CVK_123 not in the Motif Atlas
Geometric match to HL_5TBW_007
Geometric discrepancy: 0.101
The information below is about HL_5TBW_007
Detailed Annotation
T-loop with unstacked turn
Broad Annotation
T-loop
Motif group
HL_08002.12
Basepair signature
cWW-cWW-F-tWH
Number of instances in this motif group
16

Unit IDs

8CVK|1|2A|G|327
8CVK|1|2A|U|328
8CVK|1|2A|G|329
8CVK|1|2A|A|330
8CVK|1|2A|A|331
8CVK|1|2A|A|332
8CVK|1|2A|G|333
8CVK|1|2A|C|334
8CVK|1|2A|C|335

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2F
50S ribosomal protein L4
Chain 2Y
50S ribosomal protein L24

Coloring options:


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