HL_8CVK_165

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

8CVK|1|2A|A|2268, 8CVK|1|2A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVK_165 not in the Motif Atlas

Geometric match to HL_7RQB_054

Geometric discrepancy: 0.067

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

8CVK|1|2A|C|2264
8CVK|1|2A|U|2265
8CVK|1|2A|A|2266
8CVK|1|2A|A|2267
8CVK|1|2A|A|2268
8CVK|1|2A|A|2269
8CVK|1|2A|G|2270
8CVK|1|2A|G|2271
8CVK|1|2A|U|2272
8CVK|1|2A|A|2273
8CVK|1|2A|A|2274
8CVK|1|2A|C|2275
8CVK|1|2A|G|2276

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2Q

50S ribosomal protein L16