3D structure

PDB id
8CVK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
CUGCAACCCG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CVK_211 not in the Motif Atlas
Homologous match to HL_5J7L_028
Geometric discrepancy: 0.1541
The information below is about HL_5J7L_028
Detailed Annotation
T-loop with 3 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_02887.3
Basepair signature
cWW-tWH-F-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

8CVK|1|2a|C|1314
8CVK|1|2a|U|1315
8CVK|1|2a|G|1316
8CVK|1|2a|C|1317
8CVK|1|2a|A|1318
8CVK|1|2a|A|1319
8CVK|1|2a|C|1320
8CVK|1|2a|C|1321
8CVK|1|2a|C|1322
8CVK|1|2a|G|1323

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2m
30S ribosomal protein S13
Chain 2n
30S ribosomal protein S14 type Z
Chain 2s
30S ribosomal protein S19

Coloring options:


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