HL_8CVK_221

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CAGGGAG

Length

7 nucleotides

Bulged bases

8CVK|1|2y|G|18, 8CVK|1|2y|G|19

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVK_221 not in the Motif Atlas

Homologous match to HL_4YVI_001

Geometric discrepancy: 0.4786

The information below is about HL_4YVI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30483.1

Basepair signature

cWW-cWS-R

Number of instances in this motif group

3

Unit IDs

8CVK|1|2y|C|13
8CVK|1|2y|A|14
8CVK|1|2y|G|15
8CVK|1|2y|G|18
8CVK|1|2y|G|19
8CVK|1|2y|A|21
8CVK|1|2y|G|22

Current chains

Chain 2y

E-site Deacylated tRNAphe

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA