HL_8CVK_222
3D structure
- PDB id
- 8CVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- GA(PSU)UGAA(MIA)A(PSU)C
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CVK_222 not in the Motif Atlas
- Homologous match to HL_4V7M_033
- Geometric discrepancy: 0.4899
- The information below is about HL_4V7M_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CVK|1|2y|G|30
8CVK|1|2y|A|31
8CVK|1|2y|PSU|32
8CVK|1|2y|U|33
8CVK|1|2y|G|34
8CVK|1|2y|A|35
8CVK|1|2y|A|36
8CVK|1|2y|MIA|37
8CVK|1|2y|A|38
8CVK|1|2y|PSU|39
8CVK|1|2y|C|40
Current chains
- Chain 2y
- E-site Deacylated tRNAphe
Nearby chains
- Chain 2a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 2g
- 30S ribosomal protein S7
- Chain 2k
- 30S ribosomal protein S11
- Chain 2v
- MF-mRNA
- Chain 2x
- Transfer RNA; tRNA
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