HL_4V7M_033
3D structure
- PDB id
- 4V7M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structures of Capreomycin bound to the 70S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- GAUUCUGAUUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V7M_033 not in the Motif Atlas
- Homologous match to HL_5IB8_208
- Geometric discrepancy: 0.2676
- The information below is about HL_5IB8_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_36684.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
4V7M|1|AW|G|29
4V7M|1|AW|A|30
4V7M|1|AW|U|31
4V7M|1|AW|U|32
4V7M|1|AW|C|33
4V7M|1|AW|U|34
4V7M|1|AW|G|35
4V7M|1|AW|A|36
4V7M|1|AW|U|37
4V7M|1|AW|U|38
4V7M|1|AW|C|39
Current chains
- Chain AW
- tRNA-Gln
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AL
- 30S ribosomal protein S12
- Chain AM
- 30S ribosomal protein S13
- Chain AV
- RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3')
- Chain AZ
- capreomycin IA
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
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