HL_8CVK_228

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGCUUUGCC

Length

9 nucleotides

Bulged bases

8CVK|1|1a|U|202, 8CVK|1|1a|U|204

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVK_228 not in the Motif Atlas

Homologous match to HL_6CZR_076

Geometric discrepancy: 0.5989

The information below is about HL_6CZR_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34168.3

Basepair signature

cWW-cWW-F

Number of instances in this motif group

11

Unit IDs

8CVK|1|1a|G|199
8CVK|1|1a|G|200
8CVK|1|1a|C|201
8CVK|1|1a|U|202
8CVK|1|1a|U|203
8CVK|1|1a|U|204
8CVK|1|1a|G|216
8CVK|1|1a|C|217
8CVK|1|1a|C|218

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains