HL_8CVL_160

3D structure

PDB id

8CVL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

8CVL|1|2A|A|2030, 8CVL|1|2A|A|2031, 8CVL|1|2A|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVL_160 not in the Motif Atlas

Geometric match to HL_7RQB_050

Geometric discrepancy: 0.0472

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

8CVL|1|2A|G|2027
8CVL|1|2A|U|2028
8CVL|1|2A|G|2029
8CVL|1|2A|A|2030
8CVL|1|2A|A|2031
8CVL|1|2A|G|2032
8CVL|1|2A|A|2033
8CVL|1|2A|U|2034
8CVL|1|2A|G|2035
8CVL|1|2A|C|2036

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3