HL_8CVM_002

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

G(5MC)UCAUAAC

Length

9 nucleotides

Bulged bases

8CVM|1|C|U|33

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVM_002 not in the Motif Atlas

Homologous match to HL_4TUE_034

Geometric discrepancy: 0.1012

The information below is about HL_4TUE_034

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.6

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

8CVM|1|C|G|31
8CVM|1|C|5MC|32
8CVM|1|C|U|33
8CVM|1|C|C|34
8CVM|1|C|A|35
8CVM|1|C|U|36
8CVM|1|C|A|37
8CVM|1|C|A|38
8CVM|1|C|C|39

Current chains

Chain C

Initiator fMet RNA

Nearby chains