RNA 3D Hub //

8CVM Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8CVM_0011/C/13:22tRNA D-loop
homologous
HL_5B63_003
HL_20811.4
HL_8CVM_0021/C/31:39tRNA anticodon loop
homologous
HL_4TUE_034
HL_06059.6
HL_8CVM_0031/C/53:61T-loop with 2 stacked bulged bases
homologous
HL_6CFJ_108
HL_28252.8
HL_8CVM_0041/a/58:67No text annotation
homologous
HL_5J7L_134
HL_35677.3
HL_8CVM_0771/a/80:104No text annotation
HL_8CVM_0051/a/86:94No text annotation
geometric
HL_2Y8W_001
HL_81100.2
HL_8CVM_0781/a/122:127No text annotation
homologous
HL_5J7L_136
HL_82710.2
HL_8CVM_0071/a/141:148GNRA wlth tandem sheared
homologous
HL_4WF9_004
HL_81538.2
HL_8CVM_0081/a/164:174No text annotation
homologous
HL_5J7L_138
HL_68257.1
HL_8CVM_0091/a/201:208No text annotation
homologous
HL_4WF9_006
HL_30068.2
HL_8CVM_0101/a/232:237No text annotation
homologous
HL_5J7L_140
HL_62934.1
HL_8CVM_0111/a/253:259No text annotation
homologous
HL_7RQB_008
NA
HL_8CVM_0131/a/343:348No text annotation
geometric
HL_4V9F_003
HL_75660.5
HL_8CVM_0141/a/390:397T-loop with 2 stacked bulged bases
homologous
HL_5J7L_142
HL_01609.3
HL_8CVM_0151/a/404:408No text annotation
homologous
HL_5J7L_143
HL_75660.5
HL_8CVM_0161/a/412:420T-loop with unstacked turn
homologous
HL_5J7L_144
HL_27670.2
HL_8CVM_0171/a/471:481No text annotation
homologous
HL_5J7L_145
HL_91503.7
HL_8CVM_0181/a/499:506No text annotation
homologous
HL_7RQB_014
NA
HL_8CVM_0191/a/551:556GNRA
homologous
HL_7RQB_015
NA
HL_8CVM_0201/a/576:581GNRA
homologous
HL_4WF9_016
HL_37824.7
HL_8CVM_0211/a/629:635No text annotation
geometric
HL_4LFB_004
HL_48417.5
HL_8CVM_0221/a/649:658T-loop with 2 stacked bulged bases
geometric
HL_4WF9_018
HL_28252.8
HL_8CVM_0231/a/696:702No text annotation
geometric
HL_1WZ2_007
HL_75660.5
HL_8CVM_0241/a/715:720GNRA
homologous
HL_7RQB_020
NA
HL_8CVM_0251/a/727:733No text annotation
homologous
HL_7RQB_021
NA
HL_8CVM_0261/a/797:804No text annotation
homologous
HL_7RQB_022
NA
HL_8CVM_0271/a/829:838No text annotation
homologous
HL_4WF9_023
HL_88205.2
HL_8CVM_0281/a/864:870No text annotation
homologous
HL_5J7L_156
HL_87954.2
HL_8CVM_0291/a/911:916No text annotation
homologous
HL_4WF9_025
HL_55195.3
HL_8CVM_0831/a/970:975No text annotation
HL_8CVM_0311/a/1037:1046No text annotation
homologous
HL_5J7L_159
NA
HL_8CVM_0321/a/1061:1068No text annotation
homologous
HL_4WF9_028
HL_42998.2
HL_8CVM_0801/a/1147:1157No text annotation
homologous
HL_5J7L_161
HL_19210.3
HL_8CVM_0341/a/1175:1182No text annotation
geometric
HL_5U3G_001
HL_75660.5
HL_8CVM_0351/a/1252:1258No text annotation
geometric
HL_361D_002
HL_13963.3
HL_8CVM_0361/a/1298:1303GNRA
homologous
HL_4WF9_031
HL_37824.7
HL_8CVM_0371/a/1357:1365No text annotation
homologous
HL_7RQB_033
NA
HL_8CVM_0381/a/1400:1406Pseudoknot geometry with 3' bulge
homologous
HL_4WF9_033
HL_57176.2
HL_8CVM_0391/a/1439:1444GNRA
homologous
HL_5J7L_167
HL_37824.7
HL_8CVM_0401/a/1465:1474No text annotation
homologous
HL_4WF9_035
HL_81545.2
HL_8CVM_0411/a/1631:1642No text annotation
HL_8CVM_0421/a/1672:1678Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_170
HL_57176.2
HL_8CVM_0431/a/1713:1723No text annotation
HL_8CVM_0441/a/1748:1751Mini UNCG
homologous
HL_5J7L_172
HL_48778.2
HL_8CVM_0451/a/1796:1803No text annotation
homologous
HL_7RQB_040
NA
HL_8CVM_0461/a/1814:1820GNRA
homologous
HL_5J7L_174
HL_37824.7
HL_8CVM_0471/a/1875:1880UNCG
geometric
HL_4V9F_044
HL_34617.5
HL_8CVM_0481/a/1909:1916No text annotation
HL_8CVM_0491/a/1935:1939No text annotation
homologous
HL_7RQB_044
NA
HL_8CVM_0501/a/1960:1970No text annotation
homologous
HL_7RQB_045
NA
HL_8CVM_0511/a/1989:1994GNRA
homologous
HL_7RQB_046
NA
HL_8CVM_0521/a/2051:2056GNRA
geometric
HL_6AZ4_001
HL_37824.7
HL_8CVM_0531/a/2093:2103No text annotation
homologous
HL_5J7L_181
HL_25847.2
HL_8CVM_0541/a/2132:2140No text annotation
homologous
HL_5J7L_182
HL_20167.2
HL_8CVM_0551/a/2210:2219No text annotation
homologous
HL_7RQB_050
NA
HL_8CVM_0571/a/2391:2397No text annotation
homologous
HL_5J7L_185
HL_49922.4
HL_8CVM_0581/a/2430:2438No text annotation
homologous
HL_7RQB_053
NA
HL_8CVM_0591/a/2446:2458No text annotation
homologous
HL_4WF9_050
HL_91939.2
HL_8CVM_0841/a/2486:2494No text annotation
homologous
HL_5J7L_219
HL_50860.2
HL_8CVM_0611/a/2506:2513Pseudoknot geometry
homologous
HL_5J7L_189
HL_93324.4
HL_8CVM_0621/a/2538:2543GNRA
homologous
HL_5J7L_190
HL_37824.7
HL_8CVM_0631/a/2556:2561GNRA
homologous
HL_5J7L_191
HL_37824.7
HL_8CVM_0641/a/2586:2595tRNA anticodon loop
geometric
HL_2AKE_002
HL_83632.1
HL_8CVM_0651/a/2653:2661No text annotation
homologous
HL_7RQB_060
NA
HL_8CVM_0811/a/2710:2717No text annotation
homologous
HL_4WF9_057
HL_31585.4
HL_8CVM_0671/a/2733:2739No text annotation
homologous
HL_4WF9_058
HL_30068.2
HL_8CVM_0681/a/2776:2781GNRA
homologous
HL_5J7L_196
HL_37824.7
HL_8CVM_0691/a/2840:2845GNRA
homologous
HL_7RQB_064
NA
HL_8CVM_0701/a/2883:2888Ribsomal LSU H95
homologous
HL_5J7L_198
HL_65794.5
HL_8CVM_0711/a/2927:2941No text annotation
homologous
HL_7RQB_066
NA
HL_8CVM_0721/a/2976:2983Other HL
homologous
HL_5J7L_200
HL_08100.1
HL_8CVM_0731/a/2999:3007No text annotation
homologous
HL_5J7L_201
HL_64690.6
HL_8CVM_0741/a/3036:3041GNRA
homologous
HL_7RQB_069
NA
HL_8CVM_0821/b/34:48No text annotation
homologous
HL_4V9F_074
HL_97756.2
HL_8CVM_0751/b/38:44No text annotation
geometric
HL_5J7L_203
HL_47787.2
HL_8CVM_0761/b/86:91GNRA
homologous
HL_7A0S_070
HL_37824.7

Problematic loops

#loop idProblemSequence
HL_8CVM_006No text annotation
HL_8CVM_012No text annotation
HL_8CVM_079No text annotation
HL_8CVM_030No text annotation
HL_8CVM_033No text annotation
HL_8CVM_056No text annotation
HL_8CVM_060No text annotation
HL_8CVM_066No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8CVM_0011/a/2:4,
1/a/3078:3080		No text annotation
IL_8CVM_0021/a/23:29,
1/a/598:604		Triple sheared with non-canonical cWW
geometric
IL_5J7L_245
IL_04021.2
IL_8CVM_0031/a/35:36,
1/a/531:533		Single bulged A
homologous
IL_7A0S_002
IL_31462.6
IL_8CVM_0041/a/42:43,
1/a/523:525		Minor groove platform
homologous
IL_5J7L_247
IL_51454.3
IL_8CVM_0051/a/80:86,
1/a/94:104		No text annotation
IL_8CVM_0061/a/131:137,
1/a/152:153		Multiple bulged bases
geometric
IL_1R3E_002
IL_84476.1
IL_8CVM_0071/a/158:160,
1/a/178:181		Major groove platform with extra cWW
geometric
IL_7A0S_019
IL_51387.2
IL_8CVM_0081/a/190:191,
1/a/219:221		Single stack bend
homologous
IL_4WF9_007
IL_90729.1
IL_8CVM_0091/a/195:201,
1/a/208:215		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_250
IL_04346.10
IL_8CVM_0101/a/246:252,
1/a/260:265		7x6 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_007
NA
IL_8CVM_0111/a/328:329,
1/a/452:455		Minor groove platform
geometric
IL_7RQB_073
NA
IL_8CVM_1171/a/371:380,
1/a/428:440		No text annotation
IL_8CVM_0121/a/570:573,
1/a/584:597		No text annotation
homologous
IL_5J7L_255
IL_81516.2
IL_8CVM_0131/a/624:627,
1/a/637:640		Double sheared
homologous
IL_5J7L_256
IL_09705.15
IL_8CVM_0141/a/647:649,
1/a/658:660		Isolated non-canonical cWW pair
homologous
IL_5J7L_257
IL_07785.1
IL_8CVM_0151/a/674:676,
1/a/750:751		Single bulged A
homologous
IL_7A0S_012
IL_31462.6
IL_8CVM_0161/a/690:694,
1/a/704:708		AAA cross-strand stack
homologous
IL_5J7L_258
IL_66798.2
IL_8CVM_0171/a/757:759,
1/a/891:893		Isolated non-canonical cWW pair
homologous
IL_4WF9_020
IL_87907.2
IL_8CVM_0181/a/759:763,
1/a/884:891		tHW-tHW cross-strand stack
geometric
IL_7RQB_018
NA
IL_8CVM_0191/a/782:783,
1/a/848:850		Single bulged A
homologous
IL_5J7L_261
IL_31462.6
IL_8CVM_0201/a/787:788,
1/a/813:815		Single bulged G
geometric
IL_5J7L_262
IL_00225.13
IL_8CVM_0211/a/788:792,
1/a/809:813		Triple sheared
homologous
IL_7RQB_021
NA
IL_8CVM_0221/a/794:796,
1/a/805:807		No text annotation
homologous
IL_4WF9_025
NA
IL_8CVM_0231/a/823:825,
1/a/842:843		Major groove platform
homologous
IL_4WF9_026
IL_48076.6
IL_8CVM_0241/a/860:862,
1/a/872:876		Multiple bulged bases
homologous
IL_5J7L_265
IL_06549.2
IL_8CVM_0251/a/922:923,
1/a/1023:1025		Single stack bend
homologous
IL_7RQB_024
NA
IL_8CVM_0261/a/929:932,
1/a/1016:1017		Major groove platform; stack outside cWW
geometric
IL_7A0S_046
IL_50694.7
IL_8CVM_1181/a/929:933,
1/a/1014:1017		No text annotation
IL_8CVM_0271/a/932:933,
1/a/1014:1016		No text annotation
IL_8CVM_0281/a/933:934,
1/a/1012:1014		Single stack bend
geometric
IL_4C7O_002
IL_90729.1
IL_8CVM_0291/a/941:947,
1/a/999:1005		7x7 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_5J7L_270
IL_29198.2
IL_8CVM_0301/a/947:948,
1/a/997:999		Minor groove platform
geometric
IL_4V9F_034
IL_51454.3
IL_8CVM_0311/a/949:953,
1/a/993:996		C-loop
homologous
IL_5J7L_272
IL_26222.2
IL_8CVM_0321/a/955:957,
1/a/989:991		Isolated cWS basepair
homologous
IL_7RQB_030
NA
IL_8CVM_0331/a/960:964,
1/a/982:986		Triple sheared
homologous
IL_5J7L_274
IL_17948.2
IL_8CVM_1241/a/965:966,
1/a/979:981		No text annotation
IL_8CVM_0351/a/1077:1079,
1/a/1243:1244		Single bulged C
homologous
IL_7RQB_035
NA
IL_8CVM_0361/a/1081:1085,
1/a/1237:1241		UAA/GAN
homologous
IL_5J7L_277
IL_38507.2
IL_8CVM_0371/a/1087:1094,
1/a/1234:1235		SSU/LSU pseudoknot
geometric
IL_7RQB_037
NA
IL_8CVM_0381/a/1094:1096,
1/a/1233:1234		Single bulged U
homologous
IL_4WF9_038
IL_89505.4
IL_8CVM_0391/a/1101:1107,
1/a/1223:1228		Kink-turn related
homologous
IL_5J7L_280
IL_57188.5
IL_8CVM_0401/a/1107:1113,
1/a/1207:1223		No text annotation
geometric
IL_5J7L_281
IL_50715.3
IL_8CVM_0411/a/1114:1117,
1/a/1204:1206		Isolated non-canonical cWW pair
homologous
IL_5J7L_282
IL_57744.1
IL_8CVM_0421/a/1126:1135,
1/a/1190:1195		No text annotation
IL_8CVM_1191/a/1140:1145,
1/a/1159:1164		No text annotation
IL_8CVM_0431/a/1142:1145,
1/a/1159:1162		No text annotation
IL_8CVM_0441/a/1170:1174,
1/a/1183:1185		Major groove platform with extra cWW
geometric
IL_5TBW_056
NA
IL_8CVM_0451/a/1273:1275,
1/a/1324:1327		Isolated cWS basepair
homologous
IL_4WF9_044
IL_42997.3
IL_8CVM_0461/a/1284:1291,
1/a/1311:1315		Kink-turn
homologous
IL_7RQB_047
NA
IL_8CVM_0471/a/1295:1296,
1/a/1305:1307		Single bulged A
homologous
IL_7RQB_048
NA
IL_8CVM_0481/a/1339:1346,
1/a/2194:2200		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
IL_04346.10
IL_8CVM_0491/a/1386:1389,
1/a/1787:1788		Major groove platform; stack outside cWW
homologous
IL_5J7L_290
IL_50694.7
IL_8CVM_0501/a/1395:1399,
1/a/1407:1409		C-loop
homologous
IL_7RQB_051
NA
IL_8CVM_0511/a/1427:1431,
1/a/1452:1456		UAA/GAN
homologous
IL_5J7L_292
IL_89021.2
IL_8CVM_0521/a/1433:1437,
1/a/1446:1450		tSH-tHW-tHS
homologous
IL_5J7L_293
IL_17136.7
IL_8CVM_0531/a/1483:1485,
1/a/1777:1779		Isolated non-canonical cWW pair
geometric
IL_4E59_001
IL_87907.2
IL_8CVM_0541/a/1486:1489,
1/a/1773:1776		Tandem non-canonical cWW pairs
geometric
IL_5EW4_002
IL_85033.2
IL_8CVM_0551/a/1489:1492,
1/a/1770:1773		Tandem non-canonical cWW pairs
geometric
IL_6CZR_168
NA
IL_8CVM_0571/a/1597:1599,
1/a/1762:1765		Isolated non-canonical cWW pair
geometric
IL_4V88_426
NA
IL_8CVM_0581/a/1612:1615,
1/a/1740:1744		Tandem non-canonical cWW pairs
homologous
IL_5J7L_296
IL_58112.2
IL_8CVM_0591/a/1617:1620,
1/a/1734:1738		tSH-tHW
homologous
IL_7RQB_057
NA
IL_8CVM_0601/a/1649:1652,
1/a/1702:1706		No text annotation
homologous
IL_5J7L_299
IL_68574.4
IL_8CVM_0611/a/1655:1659,
1/a/1695:1699		tSH-tHW-tHS
homologous
IL_5J7L_300
IL_38862.4
IL_8CVM_0621/a/1662:1663,
1/a/1686:1692		No text annotation
IL_8CVM_0631/a/1669:1671,
1/a/1679:1680		Single bulged A
homologous
IL_5J7L_302
IL_31462.6
IL_8CVM_0651/a/1847:1849,
1/a/2178:2180		Isolated tWW turn
homologous
IL_4WF9_063
IL_67095.2
IL_8CVM_0661/a/1850:1853,
1/a/2176:2177		Major groove platform; stack outside cWW
geometric
IL_5J7L_306
IL_50694.7
IL_8CVM_1201/a/1850:1858,
1/a/2173:2177		No text annotation
homologous
IL_5J7L_386
IL_22854.4
IL_8CVM_0671/a/1853:1858,
1/a/2173:2176		Intercalated tWH
homologous
IL_5J7L_307
IL_76758.2
IL_8CVM_0681/a/1870:1875,
1/a/1880:1886		tSH-tSH-tHH-tHS
homologous
IL_7RQB_068
NA
IL_8CVM_0691/a/1894:1898,
1/a/1927:1931		Triple sheared
geometric
IL_5J7L_274
IL_17948.2
IL_8CVM_0701/a/1902:1909,
1/a/1916:1923		No text annotation
IL_8CVM_0711/a/1953:1954,
1/a/2163:2165		Single bulged A
homologous
IL_7RQB_069
NA
IL_8CVM_0721/a/1981:1987,
1/a/1996:2004		Kink-turn related
homologous
IL_7RQB_070
NA
IL_8CVM_0731/a/2020:2023,
1/a/2085:2086		Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
IL_95583.2
IL_8CVM_0741/a/2024:2025,
1/a/2081:2084		Major groove intercalation
homologous
IL_5J7L_315
IL_82107.4
IL_8CVM_0751/a/2029:2032,
1/a/2076:2077		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_316
IL_68140.4
IL_8CVM_0761/a/2034:2038,
1/a/2070:2074		UAA/GAN with extra pair
homologous
IL_7RQB_074
NA
IL_8CVM_0771/a/2039:2043,
1/a/2065:2069		Triple sheared
homologous
IL_7A0S_070
IL_50730.2
IL_8CVM_0781/a/2047:2050,
1/a/2057:2061		UAA/GAN variation
homologous
IL_5J7L_317
IL_77691.5
IL_8CVM_0791/a/2116:2117,
1/a/2147:2150		Bulged stacked bases
geometric
IL_5J7L_318
IL_22551.4
IL_8CVM_0801/a/2117:2128,
1/a/2144:2147		No text annotation
homologous
IL_5J7L_319
IL_42218.2
IL_8CVM_0811/a/2233:2235,
1/a/2799:2800		Major groove platform
homologous
IL_7RQB_078
NA
IL_8CVM_0821/a/2237:2239,
1/a/2794:2797		No text annotation
homologous
IL_4WF9_079
IL_83389.2
IL_8CVM_0841/a/2252:2253,
1/a/2620:2623		Minor groove platform
homologous
IL_7RQB_081
NA
IL_8CVM_0851/a/2263:2265,
1/a/2418:2421		Isolated tHS basepair with bulges
homologous
IL_5J7L_325
IL_85599.2
IL_8CVM_0861/a/2267:2269,
1/a/2414:2416		Isolated non-canonical cWW pair
homologous
IL_5J7L_326
IL_28037.2
IL_8CVM_1251/a/2383:2385,
1/a/2403:2404		No text annotation
IL_8CVM_0881/a/2479:2481,
1/a/2499:2503		Isolated tHS basepair with bulges
homologous
IL_7RQB_088
NA
IL_8CVM_0891/a/2532:2535,
1/a/2546:2549		Double sheared
homologous
IL_4WF9_087
IL_09705.15
IL_8CVM_0901/a/2583:2585,
1/a/2596:2597		Major groove platform
homologous
IL_7RQB_090
NA
IL_8CVM_1211/a/2636:2637,
1/a/2678:2680		Major groove platform
homologous
IL_4WF9_090
IL_48076.6
IL_8CVM_1221/a/2639:2641,
1/a/2675:2676		Major groove platform
homologous
IL_5J7L_393
IL_07039.3
IL_8CVM_0931/a/2641:2643,
1/a/2671:2675		Major groove minor groove platform with extra cWW
geometric
IL_7RQB_094
NA
IL_8CVM_0941/a/2643:2645,
1/a/2669:2671		Isolated non-canonical cWW pair
geometric
IL_3BNT_006
NA
IL_8CVM_0951/a/2648:2652,
1/a/2662:2666		Triple sheared
homologous
IL_7A0S_087
IL_17948.2
IL_8CVM_1231/a/2689:2690,
1/a/2762:2764		Major groove platform
homologous
IL_5J7L_394
IL_07039.3
IL_8CVM_0971/a/2692:2694,
1/a/2756:2760		Isolated non-canonical cWW with bulges
geometric
IL_7RQB_097
NA
IL_8CVM_0981/a/2694:2695,
1/a/2753:2756		Multiple bulged bases
homologous
IL_7RQB_098
NA
IL_8CVM_0991/a/2704:2705,
1/a/2722:2725		Major groove platform with intercalation
homologous
IL_5J7L_342
IL_02555.1
IL_8CVM_1011/a/2773:2774,
1/a/2783:2785		Single bulged A
geometric
IL_7RQB_101
NA
IL_8CVM_1021/a/2818:2822,
1/a/2956:2964		tSH-tHS-tHW
homologous
IL_4WF9_099
IL_04638.3
IL_8CVM_1031/a/2834:2840,
1/a/2845:2850		Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_5J7L_346
IL_16458.4
IL_8CVM_1041/a/2862:2866,
1/a/2907:2909		C-loop
homologous
IL_7RQB_104
NA
IL_8CVM_1061/a/2877:2878,
1/a/2893:2896		Multiple bulged bases
homologous
IL_5J7L_349
IL_42626.2
IL_8CVM_1071/a/2919:2924,
1/a/2944:2949		UAA/GAN with extra cWW
homologous
IL_7A0S_098
IL_49767.8
IL_8CVM_1081/a/3018:3019,
1/a/3058:3060		Major groove intercalation
homologous
IL_5J7L_352
IL_66635.5
IL_8CVM_1091/a/3023:3026,
1/a/3050:3054		No text annotation
homologous
IL_7RQB_109
NA
IL_8CVM_1101/a/3027:3032,
1/a/3045:3049		tHS double platform
homologous
IL_4WF9_108
IL_70411.2
IL_8CVM_1121/b/17:18,
1/b/65:67		Major groove intercalation
homologous
IL_4WF9_112
IL_31462.6
IL_8CVM_1131/b/23:29,
1/b/55:60		No text annotation
IL_8CVM_1141/b/30:31,
1/b/51:54		Major groove minor groove platform; mini C-loop
homologous
IL_4V9F_103
IL_68140.4
IL_8CVM_1151/b/34:38,
1/b/44:48		Symmetric double minor groove platform
homologous
IL_4V9F_104
IL_58103.11
IL_8CVM_1161/b/71:79,
1/b/98:106		Bacterial 5S Loop E
homologous
IL_7RQB_115
NA

Problematic loops

#loop idProblemSequence
IL_8CVM_034Isolated tHS basepair with bulges
IL_8CVM_056No text annotation
IL_8CVM_064No text annotation
IL_8CVM_083No text annotation
IL_8CVM_087Isolated non-canonical cWW pair
IL_8CVM_091No text annotation
IL_8CVM_092No text annotation
IL_8CVM_096No text annotation
IL_8CVM_100No text annotation
IL_8CVM_105No text annotation
IL_8CVM_111No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8CVM_0011/a/29:30,
1/a/563:570,
1/a/597:598		No text annotation
homologous
J3_7RQB_001
NA
J3_8CVM_0151/a/29:30,
1/a/563:573,
1/a/584:598		No text annotation
homologous
J3_9DFE_002
J3_92134.2
J3_8CVM_0161/a/31:34,
1/a/534:550,
1/a/557:562		No text annotation
homologous
J3_5J7L_067
J3_30040.2
J3_8CVM_0021/a/55:56,
1/a/69:75,
1/a/109:113		No text annotation
homologous
J3_7RQB_002
NA
J3_8CVM_0031/a/323:325,
1/a/458:464,
1/a/488:493		No text annotation
J3_8CVM_0171/a/333:341,
1/a/350:370,
1/a/441:448		No text annotation
J3_8CVM_0181/a/382:386,
1/a/401:410,
1/a/422:426		No text annotation
homologous
J3_9DFE_006
J3_46299.2
J3_8CVM_0041/a/768:774,
1/a/858:860,
1/a/876:879		No text annotation
homologous
J3_5J7L_038
J3_64189.2
J3_8CVM_0051/a/783:785,
1/a/817:821,
1/a/845:848		No text annotation
homologous
J3_7RQB_005
NA
J3_8CVM_0061/a/1138:1140,
1/a/1164:1170,
1/a/1185:1187		No text annotation
homologous
J3_5J7L_040
J3_28621.5
J3_8CVM_0221/a/1138:1140,
1/a/1164:1174,
1/a/1183:1187		No text annotation
J3_8CVM_0071/a/1374:1379,
1/a/1809:1811,
1/a/1823:1826		No text annotation
homologous
J3_4WF9_004
J3_32852.6
J3_8CVM_0081/a/1382:1385,
1/a/1789:1795,
1/a/1804:1806		No text annotation
homologous
J3_5J7L_042
J3_19545.2
J3_8CVM_0091/a/1420:1426,
1/a/1457:1461,
1/a/1478:1479		No text annotation
homologous
J3_7RQB_009
NA
J3_8CVM_0201/a/1604:1609,
1/a/1747:1748,
1/a/1751:1757		No text annotation
homologous
J3_5J7L_069
J3_34864.2
J3_8CVM_0101/a/2273:2275,
1/a/2378:2382,
1/a/2405:2410		No text annotation
homologous
J3_7RQB_010
NA
J3_8CVM_0211/a/2464:2466,
1/a/2566:2577,
1/a/2603:2609		No text annotation
homologous
J3_5J7L_070
J3_20992.1
J3_8CVM_0111/a/2477:2479,
1/a/2503:2505,
1/a/2514:2519		No text annotation
homologous
J3_4WF9_008
J3_61124.2
J3_8CVM_0121/a/2699:2702,
1/a/2727:2729,
1/a/2743:2749		No text annotation
homologous
J3_4WF9_009
J3_32601.5
J3_8CVM_0131/a/2994:2995,
1/a/3011:3016,
1/a/3062:3066		No text annotation
homologous
J3_7A0S_013
J3_76911.2
J3_8CVM_0141/b/11:16,
1/b/68:70,
1/b/107:110		No text annotation
J4_8CVM_0011/C/7:10,
1/C/25:27,
1/C/43:49,
1/C/65:66		No text annotation
homologous
J4_9DFC_015
J4_70449.28
J4_8CVM_0021/a/275:280,
1/a/318:323,
1/a/493:495,
1/a/510:513		No text annotation
J4_8CVM_0031/a/382:386,
1/a/401:404,
1/a/408:410,
1/a/422:426		No text annotation
homologous
J4_5J7L_019
J4_71729.5
J4_8CVM_0041/a/685:688,
1/a/710:714,
1/a/721:724,
1/a/736:741		No text annotation
J4_8CVM_0051/a/1347:1352,
1/a/1370:1371,
1/a/1829:1832,
1/a/2192:2193		No text annotation
homologous
J4_4WF9_004
J4_64571.5
J4_8CVM_0061/a/1386:1390,
1/a/1414:1419,
1/a/1480:1481,
1/a/1781:1788		No text annotation
homologous
J4_9DFE_004
J4_69051.6
J4_8CVM_0071/a/1389:1390,
1/a/1414:1419,
1/a/1480:1481,
1/a/1781:1787		No text annotation
homologous
J4_4WF9_006
J4_10313.5
J4_8CVM_0081/a/1624:1626,
1/a/1647:1648,
1/a/1707:1712,
1/a/1724:1730		No text annotation
J4_8CVM_0091/a/1955:1959,
1/a/1971:1975,
1/a/2010:2013,
1/a/2158:2162		No text annotation
homologous
J4_5J7L_025
J4_61477.5
J4_8CVM_0101/a/2016:2018,
1/a/2088:2089,
1/a/2107:2116,
1/a/2150:2155		No text annotation
homologous
J4_9DFE_008
J4_93343.1
J4_8CVM_0111/a/2467:2471,
1/a/2525:2529,
1/a/2552:2554,
1/a/2563:2565		No text annotation
homologous
J4_5J7L_027
J4_04930.6
J4_8CVM_0121/a/2825:2828,
1/a/2856:2858,
1/a/2913:2917,
1/a/2951:2953		No text annotation
homologous
J4_5J7L_028
J4_77044.4
J5_8CVM_0011/a/46:53,
1/a/115:120,
1/a/129:131,
1/a/153:156,
1/a/183:185		No text annotation
J5_8CVM_0021/a/275:280,
1/a/318:325,
1/a/458:464,
1/a/488:495,
1/a/510:513		No text annotation
J5_8CVM_0031/a/619:621,
1/a/643:647,
1/a/660:662,
1/a/1338:1339,
1/a/2200:2201		No text annotation
homologous
J5_9DFE_003
J5_43153.5
J5_8CVM_0041/a/667:672,
1/a/753:756,
1/a/894:897,
1/a/1272:1273,
1/a/1327:1333		No text annotation
homologous
J5_5J7L_015
J5_74302.5
J5_8CVM_0051/a/1858:1866,
1/a/1890:1892,
1/a/1933:1935,
1/a/1939:1947,
1/a/2171:2173		No text annotation
J5_8CVM_0061/a/2240:2247,
1/a/2628:2636,
1/a/2680:2689,
1/a/2764:2770,
1/a/2788:2793		No text annotation
J5_8CVM_0071/a/2256:2259,
1/a/2425:2428,
1/a/2440:2441,
1/a/2463:2464,
1/a/2609:2617		No text annotation
homologous
J5_4WF9_007
J5_39529.1
J6_8CVM_0011/a/44:45,
1/a/186:190,
1/a/221:231,
1/a/238:242,
1/a/269:273,
1/a/515:522		No text annotation
J6_8CVM_0021/a/2256:2259,
1/a/2425:2428,
1/a/2440:2441,
1/a/2463:2466,
1/a/2566:2577,
1/a/2603:2617		No text annotation
J7_8CVM_0011/a/902:907,
1/a/920:921,
1/a/1026:1029,
1/a/1054:1059,
1/a/1070:1074,
1/a/1247:1248,
1/a/1262:1267		No text annotation
J8_8CVM_0011/a/6:14,
1/a/613:619,
1/a/2201:2206,
1/a/2223:2226,
1/a/2807:2812,
1/a/2970:2973,
1/a/2986:2991,
1/a/3069:3076		No text annotation

Problematic loops

#loop idProblemSequence
J3_8CVM_019No text annotation

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