HL_8CVM_009

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8CVM|1|a|A|203

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVM_009 not in the Motif Atlas

Homologous match to HL_4WF9_006

Geometric discrepancy: 0.0554

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8CVM|1|a|G|201
8CVM|1|a|A|202
8CVM|1|a|A|203
8CVM|1|a|A|204
8CVM|1|a|C|205
8CVM|1|a|A|206
8CVM|1|a|U|207
8CVM|1|a|C|208

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain k

50S ribosomal protein L15

Chain w

50S ribosomal protein L28