HL_8CVM_014

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CUGGGAAG

Length

8 nucleotides

Bulged bases

8CVM|1|a|A|396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVM_014 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.0998

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

8CVM|1|a|C|390
8CVM|1|a|U|391
8CVM|1|a|G|392
8CVM|1|a|G|393
8CVM|1|a|G|394
8CVM|1|a|A|395
8CVM|1|a|A|396
8CVM|1|a|G|397

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain r

50S ribosomal protein L22

Chain t

50S ribosomal protein L24