HL_8CVM_018

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

8CVM|1|a|G|500

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVM_018 not in the Motif Atlas

Homologous match to HL_7RQB_014

Geometric discrepancy: 0.0874

The information below is about HL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

8CVM|1|a|G|499
8CVM|1|a|G|500
8CVM|1|a|A|501
8CVM|1|a|C|502
8CVM|1|a|C|503
8CVM|1|a|A|504
8CVM|1|a|C|505
8CVM|1|a|C|506

Current chains

Chain a

23S ribosomal RNA

Nearby chains