HL_8CVM_021

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CUGUGUG

Length

7 nucleotides

Bulged bases

8CVM|1|a|U|632

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVM_021 not in the Motif Atlas

Geometric match to HL_4LFB_004

Geometric discrepancy: 0.1549

The information below is about HL_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.5

Basepair signature

cWW-F-F

Number of instances in this motif group

26

Unit IDs

8CVM|1|a|C|629
8CVM|1|a|U|630
8CVM|1|a|G|631
8CVM|1|a|U|632
8CVM|1|a|G|633
8CVM|1|a|U|634
8CVM|1|a|G|635

Current chains

Chain a

23S ribosomal RNA

Nearby chains