HL_8CVM_029

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

8CVM|1|a|U|912, 8CVM|1|a|G|915

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVM_029 not in the Motif Atlas

Homologous match to HL_4WF9_025

Geometric discrepancy: 0.0956

The information below is about HL_4WF9_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.3

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

8CVM|1|a|U|911
8CVM|1|a|U|912
8CVM|1|a|U|913
8CVM|1|a|A|914
8CVM|1|a|G|915
8CVM|1|a|G|916

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain k

50S ribosomal protein L15