HL_8CVM_040

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

8CVM|1|a|U|1472, 8CVM|1|a|U|1473

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVM_040 not in the Motif Atlas

Homologous match to HL_4WF9_035

Geometric discrepancy: 0.1261

The information below is about HL_4WF9_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8CVM|1|a|G|1465
8CVM|1|a|U|1466
8CVM|1|a|U|1467
8CVM|1|a|G|1468
8CVM|1|a|A|1469
8CVM|1|a|U|1470
8CVM|1|a|A|1471
8CVM|1|a|U|1472
8CVM|1|a|U|1473
8CVM|1|a|C|1474

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain s

50S ribosomal protein L23