HL_8CVM_042
3D structure
- PDB id
- 8CVM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GUAAAUC
- Length
- 7 nucleotides
- Bulged bases
- 8CVM|1|a|U|1673, 8CVM|1|a|U|1677
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CVM_042 not in the Motif Atlas
- Homologous match to HL_5J7L_170
- Geometric discrepancy: 0.1746
- The information below is about HL_5J7L_170
- Detailed Annotation
- Pseudoknot geometry with 3' bulge
- Broad Annotation
- No text annotation
- Motif group
- HL_57176.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
8CVM|1|a|G|1672
8CVM|1|a|U|1673
8CVM|1|a|A|1674
8CVM|1|a|A|1675
8CVM|1|a|A|1676
8CVM|1|a|U|1677
8CVM|1|a|C|1678
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain c
- 50S ribosomal protein L2
Coloring options: