HL_8CVM_045

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CGACACUG

Length

8 nucleotides

Bulged bases

8CVM|1|a|A|1798, 8CVM|1|a|A|1800, 8CVM|1|a|U|1802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVM_045 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.0758

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

8CVM|1|a|C|1796
8CVM|1|a|G|1797
8CVM|1|a|A|1798
8CVM|1|a|C|1799
8CVM|1|a|A|1800
8CVM|1|a|C|1801
8CVM|1|a|U|1802
8CVM|1|a|G|1803

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain r

50S ribosomal protein L22