HL_8CVM_058

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

8CVM|1|a|G|2432

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVM_058 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.0848

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CVM|1|a|C|2430
8CVM|1|a|U|2431
8CVM|1|a|G|2432
8CVM|1|a|OMG|2433
8CVM|1|a|G|2434
8CVM|1|a|G|2435
8CVM|1|a|C|2436
8CVM|1|a|G|2437
8CVM|1|a|G|2438

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain C

Transfer RNA; tRNA

Chain l

50S ribosomal protein L16

Chain v

50S ribosomal protein L27