HL_8CVM_059

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CUAAAGGGUAACG

Length

13 nucleotides

Bulged bases

8CVM|1|a|A|2450, 8CVM|1|a|C|2457

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVM_059 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.0897

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8CVM|1|a|C|2446
8CVM|1|a|U|2447
8CVM|1|a|A|2448
8CVM|1|a|A|2449
8CVM|1|a|A|2450
8CVM|1|a|G|2451
8CVM|1|a|G|2452
8CVM|1|a|G|2453
8CVM|1|a|U|2454
8CVM|1|a|A|2455
8CVM|1|a|A|2456
8CVM|1|a|C|2457
8CVM|1|a|G|2458

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L16

Chain v

50S ribosomal protein L27