HL_8CVM_064

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CUUGUGGAUG

Length

10 nucleotides

Bulged bases

8CVM|1|a|U|2588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVM_064 not in the Motif Atlas

Geometric match to HL_2AKE_002

Geometric discrepancy: 0.3752

The information below is about HL_2AKE_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_83632.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8CVM|1|a|C|2586
8CVM|1|a|U|2587
8CVM|1|a|U|2588
8CVM|1|a|G|2589
8CVM|1|a|U|2590
8CVM|1|a|G|2591
8CVM|1|a|G|2592
8CVM|1|a|A|2593
8CVM|1|a|U|2594
8CVM|1|a|G|2595

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain k

50S ribosomal protein L15