HL_8CVM_072

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GAGUGUUC

Length

8 nucleotides

Bulged bases

8CVM|1|a|U|2979

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVM_072 not in the Motif Atlas

Homologous match to HL_5J7L_200

Geometric discrepancy: 0.508

The information below is about HL_5J7L_200

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8CVM|1|a|G|2976
8CVM|1|a|A|2977
8CVM|1|a|G|2978
8CVM|1|a|U|2979
8CVM|1|a|G|2980
8CVM|1|a|U|2981
8CVM|1|a|U|2982
8CVM|1|a|C|2983

Current chains

Chain a

23S ribosomal RNA

Nearby chains