HL_8CVM_073

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

AGAGAUGAU

Length

9 nucleotides

Bulged bases

8CVM|1|a|G|3000

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVM_073 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.1112

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8CVM|1|a|A|2999
8CVM|1|a|G|3000
8CVM|1|a|A|3001
8CVM|1|a|G|3002
8CVM|1|a|A|3003
8CVM|1|a|U|3004
8CVM|1|a|G|3005
8CVM|1|a|A|3006
8CVM|1|a|U|3007

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain m

50S ribosomal protein L17