HL_8CVM_080

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CUUGGAAGCAG

Length

11 nucleotides

Bulged bases

8CVM|1|a|G|1150, 8CVM|1|a|A|1153

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVM_080 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.5428

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8CVM|1|a|C|1147
8CVM|1|a|U|1148
8CVM|1|a|U|1149
8CVM|1|a|G|1150
8CVM|1|a|G|1151
8CVM|1|a|A|1152
8CVM|1|a|A|1153
8CVM|1|a|G|1154
8CVM|1|a|C|1155
8CVM|1|a|A|1156
8CVM|1|a|G|1157

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L16