HL_8CVO_008
3D structure
- PDB id
- 8CVO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, head domain only in the local refined map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- CUGCAACUCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CVO_008 not in the Motif Atlas
- Homologous match to HL_4LFB_029
- Geometric discrepancy: 0.0712
- The information below is about HL_4LFB_029
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_93658.1
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8CVO|1|A|C|1300
8CVO|1|A|U|1301
8CVO|1|A|G|1302
8CVO|1|A|C|1303
8CVO|1|A|A|1304
8CVO|1|A|A|1305
8CVO|1|A|C|1306
8CVO|1|A|U|1307
8CVO|1|A|C|1308
8CVO|1|A|G|1309
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain N
- 30S ribosomal protein S13
- Chain S
- 30S ribosomal protein S14 type Z
- Chain U
- 30S ribosomal protein S19
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