8CVO Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8CVO_001 | 1/A/947:956 | No text annotation | homologous HL_4LFB_021 HL_97521.3 | |
| HL_8CVO_002 | 1/A/997:1002 | GNRA | homologous HL_4LFB_022 HL_34789.6 | |
| HL_8CVO_003 | 1/A/1061:1066 | GNRA | homologous HL_5J7L_023 NA | |
| HL_8CVO_004 | 1/A/1074:1081 | T-loop related | homologous HL_4LFB_025 HL_63894.4 | |
| HL_8CVO_005 | 1/A/1119:1126 | No text annotation | geometric HL_1WZ2_007 HL_75660.10 | |
| HL_8CVO_006 | 1/A/1151:1157 | GNRA | homologous HL_4LFB_027 HL_34789.6 | |
| HL_8CVO_007 | 1/A/1251:1256 | GNRA | homologous HL_4LFB_028 HL_34789.6 | |
| HL_8CVO_008 | 1/A/1300:1309 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_8CVO_009 | 1/A/1342:1353 | No text annotation | homologous HL_4LFB_030 HL_86432.3 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8CVO_001 | 1/A/909:911, 1/A/1377:1378 | Single bulged G | homologous IL_4LFB_036 IL_28408.4 | |
| IL_8CVO_002 | 1/A/917:919, 1/A/1367:1371 | Minor groove platform | homologous IL_5J7L_041 NA | |
| IL_8CVO_003 | 1/A/937:938, 1/A/1212:1214 | Minor groove platform | homologous IL_4LFB_038 IL_98469.1 | |
| IL_8CVO_004 | 1/A/977:981, 1/A/1029:1030 | Minor groove platform | homologous IL_5J7L_043 NA | |
| IL_8CVO_006 | 1/A/985:987, 1/A/1022:1024 | Isolated non-canonical cWW pair | geometric IL_4M4O_002 IL_01003.6 | |
| IL_8CVO_008 | 1/A/1033:1035, 1/A/1194:1195 | Single bulged U | homologous IL_5J7L_046 NA | |
| IL_8CVO_009 | 1/A/1037:1041, 1/A/1190:1192 | Isolated cWS basepair | homologous IL_4LFB_044 IL_82453.3 | |
| IL_8CVO_010 | 1/A/1042:1043, 1/A/1185:1189 | Minor groove platform | homologous IL_5J7L_048 NA | |
| IL_8CVO_011 | 1/A/1045:1046, 1/A/1181:1183 | Single bulged A | geometric IL_5J7L_049 NA | |
| IL_8CVO_012 | 1/A/1046:1048, 1/A/1179:1181 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_71625.5 | |
| IL_8CVO_013 | 1/A/1109:1113, 1/A/1130:1135 | No text annotation | homologous IL_5J7L_051 NA | |
| IL_8CVO_014 | 1/A/1114:1117, 1/A/1128:1129 | Minor groove platform | homologous IL_5J7L_052 NA | |
| IL_8CVO_015 | 1/A/1144:1147, 1/A/1161:1167 | No text annotation | geometric IL_5J7L_053 NA | |
| IL_8CVO_016 | 1/A/1233:1239, 1/A/1270:1276 | No text annotation | homologous IL_4LFB_051 IL_12056.1 | |
| IL_8CVO_017 | 1/A/1241:1244, 1/A/1263:1268 | 180 degree turn | homologous IL_4LFB_052 IL_08849.1 | |
| IL_8CVO_018 | 1/A/1245:1248, 1/A/1259:1262 | Double sheared | geometric IL_1SAQ_002 NA | |
| IL_8CVO_019 | 1/A/1289:1294, 1/A/1315:1320 | No text annotation | geometric IL_4LFB_055 IL_28265.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8CVO_020 | No text annotation | ||
| IL_8CVO_005 | Single stack bend | ||
| IL_8CVO_007 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8CVO_001 | 1/A/920:923, 1/A/1330:1336, 1/A/1359:1366 | No text annotation | homologous J3_4LFB_002 J3_85722.3 | |
| J3_8CVO_002 | 1/A/927:930, 1/A/1221:1223, 1/A/1323:1326 | No text annotation | homologous J3_4LFB_003 J3_44359.3 | |
| J3_8CVO_003 | 1/A/939:946, 1/A/957:968, 1/A/1207:1211 | No text annotation | homologous J3_4LFB_004 J3_88451.3 | |
| J3_8CVO_004 | 1/A/974:977, 1/A/1030:1032, 1/A/1196:1201 | No text annotation | homologous J3_4LFB_005 J3_84394.1 | |
| J3_8CVO_009 | 1/A/974:981, 1/A/1029:1032, 1/A/1196:1201 | No text annotation | homologous J3_5J7L_053 NA | |
| J3_8CVO_005 | 1/A/1048:1053, 1/A/1092:1098, 1/A/1173:1179 | No text annotation | homologous J3_4LFB_007 J3_01343.1 | |
| J3_8CVO_010 | 1/A/1058:1059, 1/A/1068:1071, 1/A/1084:1087 | No text annotation | homologous J3_4LFB_017 J3_11018.1 | |
| J3_8CVO_007 | 1/A/1101:1103, 1/A/1141:1144, 1/A/1167:1170 | No text annotation | homologous J3_5J7L_010 NA | |
| J3_8CVO_011 | 1/A/1101:1103, 1/A/1141:1147, 1/A/1161:1170 | No text annotation | homologous J3_5J7L_054 NA | |
| J3_8CVO_008 | 1/A/1223:1227, 1/A/1282:1289, 1/A/1320:1323 | No text annotation | homologous J3_4LFB_009 J3_03192.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8CVO_006 | No text annotation |
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