HL_8CVO_009
3D structure
- PDB id
- 8CVO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, head domain only in the local refined map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- GAUCAGCAACGC
- Length
- 12 nucleotides
- Bulged bases
- 8CVO|1|A|A|1349, 8CVO|1|A|C|1351
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CVO_009 not in the Motif Atlas
- Homologous match to HL_4LFB_030
- Geometric discrepancy: 0.0691
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.3
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8CVO|1|A|G|1342
8CVO|1|A|A|1343
8CVO|1|A|U|1344
8CVO|1|A|C|1345
8CVO|1|A|A|1346
8CVO|1|A|G|1347
8CVO|1|A|C|1348
8CVO|1|A|A|1349
8CVO|1|A|A|1350
8CVO|1|A|C|1351
8CVO|1|A|G|1352
8CVO|1|A|C|1353
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain J
- 30S ribosomal protein S9
- Chain M
- 30S ribosomal protein S10
- Chain N
- 30S ribosomal protein S13
- Chain S
- 30S ribosomal protein S14 type Z
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