HL_8CWO_020

3D structure

PDB id

8CWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, body domain only in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CWO_020 not in the Motif Atlas

Homologous match to HL_4LFB_020

Geometric discrepancy: 0.0796

The information below is about HL_4LFB_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

8CWO|1|A|C|881
8CWO|1|A|G|882
8CWO|1|A|C|883
8CWO|1|A|A|884
8CWO|1|A|A|885
8CWO|1|A|G|886

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain X

30S ribosomal protein bS22