8CWO Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8CWO_001 | 1/A/16:26 | No text annotation | homologous HL_4LFB_001 HL_73535.3 | |
| HL_8CWO_003 | 1/A/159:164 | GNRA | homologous HL_4LFB_003 HL_34789.6 | |
| HL_8CWO_004 | 1/A/194:199 | GNRA variation | geometric HL_1L9A_001 NA | |
| HL_8CWO_005 | 1/A/214:221 | No text annotation | geometric HL_9E6Q_025 HL_28253.1 | |
| HL_8CWO_006 | 1/A/261:269 | GNRA related | homologous HL_4LFB_006 HL_87268.4 | |
| HL_8CWO_007 | 1/A/298:303 | GNRA | homologous HL_4LFB_007 HL_34789.6 | |
| HL_8CWO_008 | 1/A/322:335 | No text annotation | ||
| HL_8CWO_009 | 1/A/344:349 | UNCG | homologous HL_4LFB_009 HL_61337.6 | |
| HL_8CWO_010 | 1/A/381:386 | GNRA | homologous HL_4LFB_010 HL_34789.6 | |
| HL_8CWO_011 | 1/A/421:426 | UNCG | homologous HL_5J7L_011 NA | |
| HL_8CWO_012 | 1/A/456:461 | GNRA | geometric HL_4Y1M_002 HL_34789.6 | |
| HL_8CWO_024 | 1/A/504:509 | GNRA variation | homologous HL_4LFB_033 HL_34789.6 | |
| HL_8CWO_014 | 1/A/599:605 | GNRA-like with tWH | homologous HL_4LFB_014 HL_27656.1 | |
| HL_8CWO_015 | 1/A/671:680 | No text annotation | homologous HL_4LFB_015 HL_38491.4 | |
| HL_8CWO_016 | 1/A/708:713 | GNRA | homologous HL_5J7L_016 NA | |
| HL_8CWO_017 | 1/A/768:778 | No text annotation | homologous HL_4LFB_017 HL_38491.4 | |
| HL_8CWO_018 | 1/A/822:830 | No text annotation | ||
| HL_8CWO_019 | 1/A/846:851 | GNRA | homologous HL_4LFB_019 HL_34789.6 | |
| HL_8CWO_020 | 1/A/881:886 | GNRA | homologous HL_4LFB_020 HL_34789.6 | |
| HL_8CWO_022 | 1/A/1435:1442 | No text annotation | ||
| HL_8CWO_023 | 1/A/1502:1507 | GNRA | homologous HL_4LFB_032 HL_34789.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8CWO_002 | No text annotation | ||
| HL_8CWO_013 | No text annotation | ||
| HL_8CWO_021 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8CWO_001 | 1/A/34:36, 1/A/534:535 | Single bulged G | homologous IL_5J7L_001 NA | |
| IL_8CWO_002 | 1/A/48:49, 1/A/398:400 | Single bulged A | homologous IL_5J7L_002 NA | |
| IL_8CWO_003 | 1/A/51:56, 1/A/361:363 | No text annotation | homologous IL_5J7L_003 NA | |
| IL_8CWO_004 | 1/A/58:60, 1/A/358:359 | Minor groove platform | homologous IL_4LFB_004 IL_41261.1 | |
| IL_8CWO_005 | 1/A/67:70, 1/A/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_71421.5 | |
| IL_8CWO_006 | 1/A/71:73, 1/A/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 NA | |
| IL_8CWO_007 | 1/A/74:77, 1/A/97:98 | Minor groove platform | homologous IL_5J7L_007 NA | |
| IL_8CWO_008 | 1/A/77:79, 1/A/93:97 | No text annotation | geometric IL_4V84_070 NA | |
| IL_8CWO_009 | 1/A/129:132, 1/A/233:234 | Multiple bulged bases | homologous IL_4LFB_007 IL_16407.1 | |
| IL_8CWO_010 | 1/A/133:137, 1/A/229:232 | No text annotation | homologous IL_4LFB_008 IL_60988.4 | |
| IL_8CWO_011 | 1/A/148:154, 1/A/169:176 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 NA | |
| IL_8CWO_012 | 1/A/244:249, 1/A/279:286 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.6 | |
| IL_8CWO_013 | 1/A/251:254, 1/A/276:277 | No text annotation | homologous IL_4LFB_012 IL_22002.1 | |
| IL_8CWO_014 | 1/A/294:295, 1/A/306:310 | C-loop | homologous IL_5J7L_016 NA | |
| IL_8CWO_015 | 1/A/369:371, 1/A/394:395 | Single bulged U | homologous IL_5J7L_017 NA | |
| IL_8CWO_016 | 1/A/373:377, 1/A/391:392 | C-loop | geometric IL_5J7L_018 NA | |
| IL_8CWO_017 | 1/A/377:378, 1/A/389:391 | Single bulged G | homologous IL_5J7L_019 NA | |
| IL_8CWO_018 | 1/A/411:418, 1/A/429:435 | No text annotation | homologous IL_4LFB_017 IL_62329.1 | |
| IL_8CWO_046 | 1/A/442:443, 1/A/475:479 | No text annotation | ||
| IL_8CWO_020 | 1/A/448:452, 1/A/465:470 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_82100.1 | |
| IL_8CWO_021 | 1/A/452:456, 1/A/461:465 | No text annotation | ||
| IL_8CWO_022 | 1/A/486:493, 1/A/522:523 | SSU/LSU pseudoknot | homologous IL_5J7L_024 NA | |
| IL_8CWO_023 | 1/A/497:503, 1/A/510:518 | Kink-turn related | homologous IL_4LFB_021 IL_52042.3 | |
| IL_8CWO_047 | 1/A/551:557, 1/A/864:865 | No text annotation | homologous IL_4LFB_022 IL_20847.3 | |
| IL_8CWO_024 | 1/A/562:566, 1/A/739:743 | tSH-tWH-tHS | homologous IL_4LFB_023 IL_05821.3 | |
| IL_8CWO_025 | 1/A/576:578, 1/A/626:627 | Major groove platform | homologous IL_4LFB_024 IL_48076.10 | |
| IL_8CWO_026 | 1/A/579:580, 1/A/622:625 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_73108.4 | |
| IL_8CWO_027 | 1/A/587:593, 1/A/611:615 | No text annotation | geometric IL_8C3A_433 NA | |
| IL_8CWO_028 | 1/A/636:637, 1/A/733:736 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_74641.4 | |
| IL_8CWO_029 | 1/A/639:641, 1/A/728:731 | Decoding loop related | geometric IL_2O3X_003 IL_53541.1 | |
| IL_8CWO_030 | 1/A/644:648, 1/A/722:725 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 NA | |
| IL_8CWO_048 | 1/A/655:659, 1/A/695:699 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_71154.5 | |
| IL_8CWO_032 | 1/A/666:670, 1/A/681:688 | Kink-turn | homologous IL_5J7L_035 NA | |
| IL_8CWO_033 | 1/A/756:760, 1/A/786:787 | Left turn | homologous IL_4LFB_032 IL_29346.3 | |
| IL_8CWO_034 | 1/A/761:765, 1/A/781:785 | tSH-tWH-tHS | homologous IL_4LFB_033 IL_05821.3 | |
| IL_8CWO_035 | 1/A/871:878, 1/A/889:894 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 NA | |
| IL_8CWO_036 | 1/A/1386:1388, 1/A/1488:1491 | No text annotation | geometric IL_5J7L_058 NA | |
| IL_8CWO_049 | 1/A/1388:1391, 1/A/1484:1488 | No text annotation | homologous IL_5J7L_059 NA | |
| IL_8CWO_050 | 1/A/1392:1394, 1/A/1481:1483 | Isolated non-canonical cWW pair | homologous IL_5J7L_363 NA | |
| IL_8CWO_051 | 1/A/1394:1396, 1/A/1478:1481 | Single bulged A | geometric IL_8UO6_002 IL_53541.1 | |
| IL_8CWO_039 | 1/A/1399:1401, 1/A/1473:1475 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_8CWO_040 | 1/A/1403:1406, 1/A/1468:1471 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_8CWO_041 | 1/A/1411:1414, 1/A/1460:1463 | Tandem non-canonical cWW pairs | geometric IL_5TBW_100 NA | |
| IL_8CWO_042 | 1/A/1417:1422, 1/A/1453:1457 | Triple sheared related | geometric IL_4V9F_018 IL_51313.1 | |
| IL_8CWO_043 | 1/A/1422:1424, 1/A/1451:1453 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_01003.6 | |
| IL_8CWO_044 | 1/A/1427:1430, 1/A/1446:1448 | Isolated tHS basepair with bulges | geometric IL_7RQB_012 NA | |
| IL_8CWO_045 | 1/A/1432:1435, 1/A/1442:1444 | No text annotation | homologous IL_5J7L_065 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8CWO_019 | No text annotation | ||
| IL_8CWO_031 | No text annotation | ||
| IL_8CWO_037 | No text annotation | ||
| IL_8CWO_038 | Partly complementary |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8CWO_001 | 1/A/50:51, 1/A/363:369, 1/A/395:397 | No text annotation | homologous J3_5J7L_001 NA | |
| J3_8CWO_005 | 1/A/50:56, 1/A/361:369, 1/A/395:397 | No text annotation | homologous J3_5J7L_050 NA | |
| J3_8CWO_002 | 1/A/568:570, 1/A/633:636, 1/A/736:737 | No text annotation | homologous J3_5J7L_002 NA | |
| J3_8CWO_006 | 1/A/568:570, 1/A/633:637, 1/A/733:737 | No text annotation | homologous J3_5J7L_051 NA | |
| J3_8CWO_003 | 1/A/654:655, 1/A/699:707, 1/A/714:716 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_8CWO_004 | 1/A/808:811, 1/A/841:845, 1/A/852:858 | No text annotation | homologous J3_5J7L_004 NA | |
| J4_8CWO_001 | 1/A/115:123, 1/A/240:242, 1/A/288:291, 1/A/313:314 | No text annotation | ||
| J4_8CWO_002 | 1/A/143:145, 1/A/179:185, 1/A/208:214, 1/A/221:223 | No text annotation | ||
| J4_8CWO_003 | 1/A/557:559, 1/A/746:751, 1/A/792:803, 1/A/863:864 | No text annotation | homologous J4_4LFB_003 J4_14595.3 | |
| J5_8CWO_001 | 1/A/40:43, 1/A/405:408, 1/A/438:442, 1/A/479:482, 1/A/527:530 | No text annotation | ||
| J5_8CWO_002 | 1/A/40:43, 1/A/405:408, 1/A/438:443, 1/A/475:482, 1/A/527:530 | No text annotation | ||
| J5_8CWO_003 | 1/A/62:65, 1/A/106:113, 1/A/316:318, 1/A/339:341, 1/A/352:356 | No text annotation | homologous J5_5J7L_003 NA |
Problematic loops
No problematic loops
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