HL_8D29_004
3D structure
- PDB id
- 8D29 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of theophylline aptamer - apo form
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 1.81 Å
Loop
- Sequence
- GAAACAC
- Length
- 7 nucleotides
- Bulged bases
- 8D29|1|R|A|14, 8D29|1|R|A|16
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8D29_004 not in the Motif Atlas
- Geometric match to HL_8D29_001
- Geometric discrepancy: 0.049
- The information below is about HL_8D29_001
- Detailed Annotation
- Fab BL3-6 binding hairpin with tSW
- Broad Annotation
- No text annotation
- Motif group
- HL_22584.6
- Basepair signature
- cWW-tSW-F
- Number of instances in this motif group
- 26
Unit IDs
8D29|1|R|G|13
8D29|1|R|A|14
8D29|1|R|A|15
8D29|1|R|A|16
8D29|1|R|C|17
8D29|1|R|A|18
8D29|1|R|C|19
Current chains
- Chain R
- RNA (34-MER)
Nearby chains
- Chain C
- RNA (34-MER)
- Chain H
- Fab heavy chain
- Chain L
- Fab light chain
Coloring options: