8D29 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8D29_001 | 1/C/13:19 | Fab BL3-6 binding hairpin with tSW HL_64036.2 | ||
| HL_8D29_002 | 1/F/13:19 | Fab BL3-6 binding hairpin with tSW HL_64036.2 | ||
| HL_8D29_003 | 1/J/13:19 | Fab BL3-6 binding hairpin with tSW HL_64036.2 | ||
| HL_8D29_004 | 1/R/13:19 | Fab BL3-6 binding hairpin with tSW | geometric HL_8D29_001 HL_64036.2 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8D29_001 | 1/C/4:6, 1/C/29:31 | Isolated non-canonical cWW pair IL_01003.2 | ||
| IL_8D29_010 | 1/C/4:8, 1/C/27:31 | Partly complementary IL_71154.2 | ||
| IL_8D29_003 | 1/C/10:11, 1/C/21:25 | No text annotation IL_62925.1 | ||
| IL_8D29_005 | 1/F/10:11, 1/F/21:25 | Multiple bulged bases IL_84751.1 | ||
| IL_8D29_012 | 1/J/4:11, 1/J/21:31 | No text annotation IL_91386.1 | ||
| IL_8D29_007 | 1/J/9:11, 1/J/21:26 | Isolated cWS basepair IL_19687.1 | ||
| IL_8D29_013 | 1/R/10:11, 1/R/21:25 | No text annotation | geometric IL_8D29_003 IL_62925.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8D29_002 | Isolated non-canonical cWW pair | ||
| IL_8D29_004 | Partly complementary | ||
| IL_8D29_011 | Isolated non-canonical cWW pair | ||
| IL_8D29_006 | Partly complementary | ||
| IL_8D29_008 | Partly complementary | ||
| IL_8D29_009 | No text annotation |
Valid loops
No loops found
Problematic loops
No problematic loops
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