HL_8D2L_002

3D structure

PDB id

8D2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Acidothermus cellulolyticus Cas9 ternary complex (Cleavage Intermediate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CUUCGUG

Length

7 nucleotides

Bulged bases

8D2L|1|B|U|62, 8D2L|1|B|U|65

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8D2L_002 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3235

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8D2L|1|B|C|60
8D2L|1|B|U|61
8D2L|1|B|U|62
8D2L|1|B|C|63
8D2L|1|B|G|64
8D2L|1|B|U|65
8D2L|1|B|G|66

Current chains

Chain B

Single guide RNA (106-MER)

Nearby chains