HL_8E30_032

3D structure

PDB id

8E30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3142

Experimental method

ELECTRON MICROSCOPY

Resolution

1.91 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E30_032 not in the Motif Atlas

Homologous match to HL_5J7L_165

Geometric discrepancy: 0.0787

The information below is about HL_5J7L_165

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8E30|1|I|G|1281
8E30|1|I|U|1282
8E30|1|I|G|1283
8E30|1|I|A|1284
8E30|1|I|A|1285
8E30|1|I|A|1286
8E30|1|I|A|1287
8E30|1|I|G|1288
8E30|1|I|C|1289

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L22

Chain Q

50S ribosomal protein L32