HL_8E32_047

3D structure

PDB id

8E32 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

8E32|1|I|A|1913, 8E32|1|I|C|1914

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E32_047 not in the Motif Atlas

Homologous match to HL_5J7L_181

Geometric discrepancy: 0.5176

The information below is about HL_5J7L_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

8E32|1|I|G|1910
8E32|1|I|PSU|1911
8E32|1|I|A|1912
8E32|1|I|A|1913
8E32|1|I|C|1914
8E32|1|I|3TD|1915
8E32|1|I|A|1916
8E32|1|I|PSU|1917
8E32|1|I|A|1918
8E32|1|I|A|1919
8E32|1|I|C|1920

Current chains

Chain I

23S ribosomal RNA

Nearby chains