HL_8E32_053

3D structure

PDB id

8E32 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

8E32|1|I|A|2268, 8E32|1|I|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E32_053 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0935

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8E32|1|I|C|2264
8E32|1|I|U|2265
8E32|1|I|A|2266
8E32|1|I|A|2267
8E32|1|I|A|2268
8E32|1|I|G|2269
8E32|1|I|A|2270
8E32|1|I|G|2271
8E32|1|I|U|2272
8E32|1|I|A|2273
8E32|1|I|A|2274
8E32|1|I|C|2275
8E32|1|I|G|2276

Current chains

Chain I

23S ribosomal RNA

Nearby chains