HL_8E33_009

3D structure

PDB id

8E33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analog SAB001

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

8E33|1|I|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E33_009 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1049

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

21

Unit IDs

8E33|1|I|C|305
8E33|1|I|U|306
8E33|1|I|G|307
8E33|1|I|G|308
8E33|1|I|A|309
8E33|1|I|A|310
8E33|1|I|A|311
8E33|1|I|G|312

Current chains

Chain I

23S ribosomal RNA

Nearby chains