HL_8E33_011
3D structure
- PDB id
- 8E33 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosome bound to compound streptogramin analog SAB001
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.23 Å
Loop
- Sequence
- GUGACAGCC
- Length
- 9 nucleotides
- Bulged bases
- 8E33|1|I|G|329, 8E33|1|I|A|330, 8E33|1|I|C|331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8E33_011 not in the Motif Atlas
- Homologous match to HL_5J7L_144
- Geometric discrepancy: 0.0692
- The information below is about HL_5J7L_144
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_27670.2
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 13
Unit IDs
8E33|1|I|G|327
8E33|1|I|U|328
8E33|1|I|G|329
8E33|1|I|A|330
8E33|1|I|C|331
8E33|1|I|A|332
8E33|1|I|G|333
8E33|1|I|C|334
8E33|1|I|C|335
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain M
- 50S ribosomal protein L4
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