HL_8E33_049
3D structure
- PDB id
- 8E33 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosome bound to compound streptogramin analog SAB001
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.23 Å
Loop
- Sequence
- GUGAGAUGC
- Length
- 9 nucleotides
- Bulged bases
- 8E33|1|I|A|2031, 8E33|1|I|G|2032
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8E33_049 not in the Motif Atlas
- Homologous match to HL_4WF9_047
- Geometric discrepancy: 0.1029
- The information below is about HL_4WF9_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78372.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
8E33|1|I|G|2027
8E33|1|I|U|2028
8E33|1|I|G|2029
8E33|1|I|A|2031
8E33|1|I|G|2032
8E33|1|I|A|2033
8E33|1|I|U|2034
8E33|1|I|G|2035
8E33|1|I|C|2036
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain N
- 50S ribosomal protein L3
- Chain Q
- 50S ribosomal protein L32
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