HL_8E33_065

3D structure

PDB id

8E33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analog SAB001

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8E33|1|I|G|2751, 8E33|1|I|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E33_065 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0699

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8E33|1|I|C|2745
8E33|1|I|U|2746
8E33|1|I|G|2747
8E33|1|I|A|2748
8E33|1|I|A|2749
8E33|1|I|A|2750
8E33|1|I|G|2751
8E33|1|I|C|2752
8E33|1|I|A|2753
8E33|1|I|U|2754
8E33|1|I|C|2755
8E33|1|I|U|2756
8E33|1|I|A|2757
8E33|1|I|A|2758
8E33|1|I|G|2759

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L13