HL_8E35_048

3D structure

PDB id

8E35 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound SAB002

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

CG(PSU)AAC(3TD)A(PSU)AACG

Length

13 nucleotides

Bulged bases

8E35|1|I|A|1912, 8E35|1|I|A|1913, 8E35|1|I|C|1914, 8E35|1|I|A|1916

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E35_048 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3015

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8E35|1|I|C|1909
8E35|1|I|G|1910
8E35|1|I|PSU|1911
8E35|1|I|A|1912
8E35|1|I|A|1913
8E35|1|I|C|1914
8E35|1|I|3TD|1915
8E35|1|I|A|1916
8E35|1|I|PSU|1917
8E35|1|I|A|1918
8E35|1|I|A|1919
8E35|1|I|C|1920
8E35|1|I|G|1921

Current chains

Chain I

23S ribosomal RNA

Nearby chains