HL_8E35_074

3D structure

PDB id

8E35 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound SAB002

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

8E35|1|I|U|958, 8E35|1|I|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E35_074 not in the Motif Atlas

Homologous match to HL_5J7L_211

Geometric discrepancy: 0.1107

The information below is about HL_5J7L_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8E35|1|I|PSU|955
8E35|1|I|G|956
8E35|1|I|C|957
8E35|1|I|U|958
8E35|1|I|A|959
8E35|1|I|A|960
8E35|1|I|C|961
8E35|1|I|G|962

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA