HL_8E36_016

3D structure

PDB id

8E36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3146

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

8E36|1|I|U|545, 8E36|1|I|U|546, 8E36|1|I|G|548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E36_016 not in the Motif Atlas

Homologous match to HL_5J7L_149

Geometric discrepancy: 0.3806

The information below is about HL_5J7L_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_09452.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8E36|1|I|G|543
8E36|1|I|C|544
8E36|1|I|U|545
8E36|1|I|U|546
8E36|1|I|A|547
8E36|1|I|G|548
8E36|1|I|G|549
8E36|1|I|C|550

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L13