HL_8E36_043

3D structure

PDB id

8E36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3146

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

8E36|1|I|U|1729, 8E36|1|I|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E36_043 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.3186

The information below is about HL_6VMY_004

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

8E36|1|I|C|1727
8E36|1|I|C|1728
8E36|1|I|U|1729
8E36|1|I|C|1730
8E36|1|I|G|1731
8E36|1|I|C|1732
8E36|1|I|G|1733

Current chains

Chain I

23S ribosomal RNA

Nearby chains