HL_8E36_050

3D structure

PDB id

8E36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3146

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GUGAGAUGC

Length

9 nucleotides

Bulged bases

8E36|1|I|A|2031, 8E36|1|I|G|2032

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E36_050 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.107

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8E36|1|I|G|2027
8E36|1|I|U|2028
8E36|1|I|G|2029
8E36|1|I|A|2031
8E36|1|I|G|2032
8E36|1|I|A|2033
8E36|1|I|U|2034
8E36|1|I|G|2035
8E36|1|I|C|2036

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3

Chain Q

50S ribosomal protein L32