HL_8E3L_003

3D structure

PDB id

8E3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to D-linker solithromycin conjugate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

8E3L|1|I|A|125, 8E3L|1|I|A|126, 8E3L|1|I|A|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E3L_003 not in the Motif Atlas

Homologous match to HL_5J7L_136

Geometric discrepancy: 0.1054

The information below is about HL_5J7L_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82710.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8E3L|1|I|G|123
8E3L|1|I|G|124
8E3L|1|I|A|125
8E3L|1|I|A|126
8E3L|1|I|A|127
8E3L|1|I|C|128

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L34