HL_8E3L_072

3D structure

PDB id

8E3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to D-linker solithromycin conjugate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

8E3L|1|I|U|958, 8E3L|1|I|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E3L_072 not in the Motif Atlas

Homologous match to HL_5J7L_211

Geometric discrepancy: 0.1176

The information below is about HL_5J7L_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8E3L|1|I|PSU|955
8E3L|1|I|G|956
8E3L|1|I|C|957
8E3L|1|I|U|958
8E3L|1|I|A|959
8E3L|1|I|A|960
8E3L|1|I|C|961
8E3L|1|I|G|962

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA