HL_8E3M_029

3D structure

PDB id

8E3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to L-linker solithromycin conjugate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

GACGCUUAUGCGUU

Length

14 nucleotides

Bulged bases

8E3M|1|I|C|1172, 8E3M|1|I|A|1175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E3M_029 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3543

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

8E3M|1|I|G|1168
8E3M|1|I|A|1169
8E3M|1|I|C|1170
8E3M|1|I|G|1171
8E3M|1|I|C|1172
8E3M|1|I|U|1173
8E3M|1|I|U|1174
8E3M|1|I|A|1175
8E3M|1|I|U|1176
8E3M|1|I|G|1177
8E3M|1|I|C|1178
8E3M|1|I|G|1179
8E3M|1|I|U|1180
8E3M|1|I|U|1181

Current chains

Chain I

50S ribosomal RNA

Nearby chains