HL_8E3M_053

3D structure

PDB id

8E3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to L-linker solithromycin conjugate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

8E3M|1|I|A|2268, 8E3M|1|I|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E3M_053 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0654

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8E3M|1|I|C|2264
8E3M|1|I|U|2265
8E3M|1|I|A|2266
8E3M|1|I|A|2267
8E3M|1|I|A|2268
8E3M|1|I|G|2269
8E3M|1|I|A|2270
8E3M|1|I|G|2271
8E3M|1|I|U|2272
8E3M|1|I|A|2273
8E3M|1|I|A|2274
8E3M|1|I|C|2275
8E3M|1|I|G|2276

Current chains

Chain I

50S ribosomal RNA

Nearby chains